rnaseqcomp - Benchmarks for RNA-seq Quantification Pipelines
Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
Last updated 5 months ago
rnaseqvisualizationqualitycontrol
8 stars 5.90 score 1 dependenciesgcapc - GC Aware Peak Caller
Peak calling for ChIP-seq data with consideration of potential GC bias in sequencing reads. GC bias is first estimated with generalized linear mixture models using effective GC strategy, then applied into peak significance estimation.
Last updated 5 months ago
sequencingchipseqbatcheffectpeakdetection
9 stars 4.95 score 51 dependencies